PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g07480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 242aa    MW: 27649.2 Da    PI: 8.0596
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g07480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+++++  g+ R++k+c++rw +yl
  Vradi07g07480.1 14 RGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLSRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding54.62.4e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++++++  lG++ W++Ia++++ gRt++++k++w++
  Vradi07g07480.1  67 RGGFTEMEEDQIIQLHSSLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.178961IPR017930Myb domain
SuperFamilySSF466894.03E-2911108IPR009057Homeodomain-like
SMARTSM007173.0E-71363IPR001005SANT/Myb domain
PfamPF002492.5E-121461IPR001005SANT/Myb domain
CDDcd001678.65E-51661No hitNo description
PROSITE profilePS5129424.83562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2565116IPR009057Homeodomain-like
SMARTSM007171.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567110IPR001005SANT/Myb domain
CDDcd001672.64E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRQPCCDKA GLKRGPWTIE EDHKLMNFIL NNGIHCWRAV PKLAGLSRCG KSCRLRWINY  60
LRPDLKRGGF TEMEEDQIIQ LHSSLGNRWS KIASHFPGRT DNEIKNHWNT KIKKRLKLLG  120
LDPLTLMPIG DDKLKTEKQQ QKSTSKGSDQ DMHATGKEPK TEEKKVTWDD STGFLNNYEV  180
LGSWLSQETK GCSSSYCSSS FSLDDSSNLS LQQWVEDLDS SLSWDSFNPL YTDFPFLENR  240
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g07480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150444e-63AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640184.11e-179myb-related protein 315
SwissprotP813945e-76MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A3Q0FC391e-178A0A3Q0FC39_VIGRR; myb-related protein 315
STRINGXP_007151568.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]