PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 373aa    MW: 41310.7 Da    PI: 7.2803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31122178259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs+f+rsYY+Ct+++Cpvkkk+ers  +++v+ i+Y+geHnh+
  Vradi07g06660.1 122 DDGYNWRKYGQKHVKGSDFSRSYYKCTHPNCPVKKKLERSL-EGHVTAIIYKGEHNHQ 178
                      8****************************************.***************8 PP
2WRKY107.47.3e-34262320159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Vradi07g06660.1 262 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTSGCNVRKHVERASTDPKAVITTYEGKHNHD 320
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-26118178IPR003657WRKY domain
SuperFamilySSF1182909.02E-24119179IPR003657WRKY domain
SMARTSM007741.1E-31121179IPR003657WRKY domain
PROSITE profilePS5081120.576121180IPR003657WRKY domain
PfamPF031061.8E-23122178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37248322IPR003657WRKY domain
SuperFamilySSF1182908.76E-30254322IPR003657WRKY domain
PROSITE profilePS5081138.939257322IPR003657WRKY domain
SMARTSM007747.7E-39262321IPR003657WRKY domain
PfamPF031061.9E-26263320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVGGGNGEGA PPSTAAESVF NGGEAVGYSP GPMTLLSNLL GNGDEYKSFS EFLAGAMMDP  60
TPPRFFPDSP SQGHFGMTQQ QMLAHITSHS NVKIQAEDPY SLTQVSTTIS TTAQHLIPQP  120
NDDGYNWRKY GQKHVKGSDF SRSYYKCTHP NCPVKKKLER SLEGHVTAII YKGEHNHQRK  180
GTLTSTEKNS DKLKEEMSSH SESGTSDSEE VGDNETEMDE KNDEPDPKRR NTEARLQDPA  240
SLHRAVAEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP YPRSYYKCTT SGCNVRKHVE  300
RASTDPKAVI TTYEGKHNHD VPAAKTNSHT LANNSSTQPK IQNAMPDEKM HSFRGNEQRP  360
VASLRLKEEK IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43122323878Probable WRKY transcription factor 4
2lex_A3e-43122323878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-124AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507768.10.0probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-116WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S3UNX00.0A0A1S3UNX0_VIGRR; probable WRKY transcription factor 3 isoform X1
STRINGXP_007157850.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-120WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]