PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 343aa    MW: 38490.5 Da    PI: 6.7644
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-312074155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
  Vradi07g06250.1 20 KPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 74
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-291874IPR009057Homeodomain-like
SuperFamilySSF466893.23E-161976IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-222075IPR006447Myb domain, plants
PfamPF002498.9E-82273IPR001005SANT/Myb domain
PfamPF143795.9E-23119165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDLQNVQNQN MRLVLSTDAK PRLKWTPELH QRFTEAINQL GGAEKATPKS LMRVMGIPGL  60
TLYHLKSHLQ KYRLGKNSPL ETSTDNKQQG FSEIQSSDVR CSREISIRTQ NQMNDRSLKI  120
AEALQMQMEV QRKLYEQIEV QRHLQLRIEA QGKYLQSVLS KAHETLATYD SSTTGIEVAK  180
SELSQLVSII NNACPTSPIS ELTETRGLSL NCGEMKQERG TMCSLESSLT SSESSGRTEV  240
RQPLDEAEKP QKTNDISVEL PLMEIHPEGT AFKGYTSEGR KRSAATDSYG CCVDQPCEKK  300
CGNKLRKCEL SDMLELNSQY QRDIDSSVKE IDLNCSSSFW GQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506890.10.0myb family transcription factor PHL8
SwissprotF4I2748e-77PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A1S3ULM20.0A0A1S3ULM2_VIGRR; myb family transcription factor PHL8
STRINGXP_007158649.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.26e-81G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]