PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g02980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 415aa    MW: 45724.3 Da    PI: 5.1462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g02980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10229271754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er+RR ++ s+f+ L+el+P++      K + a+++  A++YI++L
  Vradi07g02980.1 229 TTERQRRVDLSSKFDALKELIPNP-----SKSDRASVVGDAINYIREL 271
                      57*********************9.....79***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.51E-13220292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-10220275No hitNo description
PROSITE profilePS5088814.094222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-11223290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8229271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGGPNMYEES GCFDPNGMVA EDCFSQMVSK SEADMSVTSI QPQNTFGMEN LAYTYSSGED  60
ASAVAMEIIA HPQQNSYNQV NNLNPQFVQV VNNHGSCEEL YSFPPQSSIL ERGHHDHQFP  120
YSTPTPDLLN LLHLPMTFEN QSTNLPKPSG PMGTADSTNV SSVSYDPFLH LNLQAPPPAL  180
RSDFAFGGGG VIEGSGIAYQ DFGNGVVEFT QDVGKKRGGK RTKQFTSTTT ERQRRVDLSS  240
KFDALKELIP NPSKSDRASV VGDAINYIRE LKRTVDELKL LVEKKRQEKQ RVVVMMRHKV  300
DTEGQDGSNP DPDAGSYNES LRSSWIQRKS KDTEVDVRIV DNEVTIKLVQ RKKIDCLVHV  360
SQVLDQLNLD LQHVAVYMIV FAVVQMCDGS CVYASAIANK LIQVMDTSLA AVSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g02980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508430.20.0transcription factor bHLH91
TrEMBLA0A1S3UQY80.0A0A1S3UQY8_VIGRR; transcription factor bHLH91
STRINGXP_007156379.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14498811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-71bHLH family protein