PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MIKC_MADS

Protein Properties

Length: 161aa MW: 18671.6 Da PI: 10.6011

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g02940.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.7	1.1e-21	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krienk+nrqvtfskRr+g+lKKA+E+SvLCdae Vradi07g02940.1 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAE 42 79******************************97 PP
2	K-box	109	5.2e-36	41	128	12	100
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 a + +++ e+++Lk++i+ Lqr++Rh++GedL+s+slkeLq+LeqqL+++lk+iR+++n+l++e+i+elqkkek +qe+n++L kk++e Vradi07g02940.1 41 A-EGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKE 128 4.679*********************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.488	1	42	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-19	1	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.7E-22	1	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-17	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-18	23	38	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.7E-30	41	126	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	16.903	42	132	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEGNWTIEYT RLKAKIDLLQ 60 RNHRHYMGED LGSMSLKELQ SLEQQLDTAL KQIRTRRNQL MYESISELQK KEKVIQEQNN 120 MLAKKIKEKE KVAAQQAQWE HPNHGVNASF LLPQPLLNMG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	2e-19	48	122	23	97	Developmental protein SEPALLATA 3
4ox0_B	2e-19	48	122	23	97	Developmental protein SEPALLATA 3
4ox0_C	2e-19	48	122	23	97	Developmental protein SEPALLATA 3
4ox0_D	2e-19	48	122	23	97	Developmental protein SEPALLATA 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g02940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB588744	0.0	AB588744.1 Vigna unguiculata VuAP1 mRNA for APETALA1, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624024.1	1e-106	truncated transcription factor CAULIFLOWER A isoform X2
Refseq	XP_028206840.1	1e-106	truncated transcription factor CAULIFLOWER A-like isoform X2
Swissprot	Q6E6S7	2e-82	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A0L9TN64	1e-105	A0A0L9TN64_PHAAN; Uncharacterized protein
STRING	GLYMA16G13070.1	1e-105	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF588	32	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	3e-55	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]