PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g00790.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 394aa    MW: 43637.6 Da    PI: 8.0088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g00790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.9e-052993371154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++++L++l+ +      +K s a++L +A+ YI+ L
  Vradi07g00790.1 299 IRKEKLGDRIQTLQRLVAPF-----GKTSTASVLSEAIGYIHFL 337
                      57788999*********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.725288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-5298342No hitNo description
SuperFamilySSF474591.57E-10298351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-8299359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEFASFHLQH QLQEESAHSI ASATPPPDPK PSITTHQSWI PSSIYDITCT HWLISTCEFV  60
CSNGCNSGFL TESFTNSREV QHKHAMTDSL RISTRQALGF HYGKSLAQQP VSDLFAARIK  120
GEMMNTSMKA MEESCSLIPI HEPRYPPSFL SSLGVTGVEF FPSENVFHNE KPIDGKTISK  180
RYNNFGDASL ISNLPTLDMT SSLVSCSLGL NPKMFDLHTS YSESCEIQPC YDAFGLNENI  240
ALCHSDMHGR ENSPSNSSKI SSFVTEVATT KRPSSCSLPK ESEAKAKRSR PSSCPPLKIR  300
KEKLGDRIQT LQRLVAPFGK TSTASVLSEA IGYIHFLHQQ IQTLSIPYMK STQSNRMVQL  360
STNKVDKEVK ADLRSRGLCL VPLSYASFIH RCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g00790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022638418.10.0uncharacterized protein LOC111241943 isoform X2
TrEMBLA0A3Q0F3B00.0A0A3Q0F3B0_VIGRR; uncharacterized protein LOC111241943 isoform X2
STRINGXP_007156084.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-33bHLH family protein