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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi06g16840.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
SRS |
| Protein Properties |
Length: 270aa MW: 28835.2 Da PI: 7.3639 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi06g16840.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 175.8 | 2.1e-54 | 72 | 208 | 18 | 153 |
DUF702 18 dCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel..kskkqsalsstklssaeskkeletsslPee 108
d + CRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ + + ++skr+re+ ++ +l+++ ++ ++ + le+ ++P+e
Vradi06g16840.1 72 DFVVPPCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQfRGDHSKRHRESieAVAAGGSLACAPVPITT--TGLEVGQFPPE 163
566667**********************************99887765555999999999984345556667777777665..569999***** PP
DUF702 109 vsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++
Vradi06g16840.1 164 LNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVD 208
*******************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MEKEYDVGEA SDGEVEKELS GDGDVQSTTG FSAARTNKKN PVRRHVENPG PSDGRNSRRC 60
IEFQTQNLAV PDFVVPPCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL AALQQQNQPP 120
QFRGDHSKRH RESIEAVAAG GSLACAPVPI TTTGLEVGQF PPELNSPAVF RCVKVSAMDA 180
PDERYAYQTA VNIGGHVFKG ILYDQGVDGP YASAGCEGSS GGGGEARPLA LMAATTTTTT 240
AGNPFDASLY PAPMNAFMAG TQFFPPPRS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
