PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g14400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 466aa MW: 50378.7 Da PI: 5.1709 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.8e-10 | 303 | 351 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Vradi06g14400.1 303 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 351 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-17 | 298 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.15E-11 | 298 | 355 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 300 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 301 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 303 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 306 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MVWKEDLVGS TVDEQWLRLM EDDGGTVEFV QMGGQENAMG FQHGNENILT CPSSGLSVAN 60 VNVSEMAISS VSMAKPSDVA NPFLPSSAWD PLVSLSQAQT FGGSSMVSHT DFANANSSYP 120 LVLENQGITN TSHLVQYMSD SNLGGMVPKV HSYATRGFSE MVAAASFVHH GSSDVANSGY 180 PPHYNPIKET QINGEQSQVE DSIPEEEAPG SGPSGNRRKR GLDHNSTFSP NKNAESETVK 240 DSPGRACDGS KEHEKKPKVE QNNSADLRGK QSAKQAKDNS SQSGEAPKEN FIHVRARRGQ 300 ATNSHSLAER VRREKISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK 360 LATVNPELNF DVDRILSKDI LQSRIGHGIS AYGPGINSSH TFPSGNFHGT LAGMPSTSSQ 420 FPPLPQNVLD HEFQSFYGIG YDSNTALDNL GPNDDVEQVA INGLV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g14400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505002.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_014505003.1 | 0.0 | transcription factor bHLH74 | ||||
TrEMBL | A0A1S3UG42 | 0.0 | A0A1S3UG42_VIGRR; transcription factor bHLH74 | ||||
STRING | XP_007160954.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7585 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-78 | bHLH family protein |