PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14320.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 359aa    MW: 41009.8 Da    PI: 6.7683
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093093442055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Vradi06g14320.1 309 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 344
                      5679*****************************885 PP
2ELK37.93.7e-13264285122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++LlrKYsgyL+sLkqE+s
  Vradi06g14320.1 264 ELKNHLLRKYSGYLSSLKQELS 285
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-20120164IPR005540KNOX1
PfamPF037908.8E-22121163IPR005540KNOX1
SMARTSM012563.9E-30171222IPR005541KNOX2
PfamPF037911.2E-24175221IPR005541KNOX2
PROSITE profilePS5121311.296264284IPR005539ELK domain
SMARTSM011883.5E-7264285IPR005539ELK domain
PfamPF037892.5E-10264285IPR005539ELK domain
PROSITE profilePS5007112.989284347IPR001356Homeobox domain
SuperFamilySSF466894.28E-19285355IPR009057Homeodomain-like
SMARTSM003892.1E-13286351IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27289350IPR009057Homeodomain-like
CDDcd000866.90E-12296348No hitNo description
PfamPF059201.0E-16304343IPR008422Homeobox KN domain
PROSITE patternPS000270322345IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEYTNNNHL SENTAPSPSP RPNFLYSPPS GGNHSHSHNH HQFPINTFHL QSGGSDHCFQ  60
SDQVAPHPSV KTEASTSQLH APIFHYPLMR GTLHNNTTTT MHHHPHQQGG SPTTSTTEVE  120
AIKAKIIAHP QYSNLLEAYM DCQKIGAPPE VVARMVAAKQ EFEARQRSSG GSRDTSKDPE  180
LDQFMEAYYD MLVKYREELT RPIQEAMDFM RRIETQLNML CNGPVRIFSA EDKCEGVGSS  240
DEDQENSGGE TELPEIDPRA EDRELKNHLL RKYSGYLSSL KQELSKKKKK GKLPKDARQK  300
LLNWWELHYK WPYPSESEKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070020.0HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505046.10.0homeobox protein knotted-1-like 1 isoform X1
SwissprotO041341e-166KNAP1_MALDO; Homeobox protein knotted-1-like 1
SwissprotO041351e-166KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1S3UGA10.0A0A1S3UGA1_VIGRR; homeobox protein knotted-1-like 1 isoform X1
STRINGGLYMA14G10430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-133KNOTTED-like from Arabidopsis thaliana