PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g13730.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 140aa    MW: 16749.4 Da    PI: 4.492
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g13730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.25.1e-11102126125
                      ---SS-EEEEEEE--TT-SS-EEEE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYY 25 
                      ldDgy+WrKYG+K+vk++++pr  Y
  Vradi06g13730.1 102 LDDGYRWRKYGKKMVKNNPNPRYVY 126
                      59********************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-1288126IPR003657WRKY domain
SuperFamilySSF1182906.15E-1095126IPR003657WRKY domain
PROSITE profilePS5081114.26397139IPR003657WRKY domain
SMARTSM007748.6E-4102138IPR003657WRKY domain
PfamPF031069.3E-8103126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MTDNNPKPPP DTPDSDDFCN QWPFELSEYL QFDDNQWMHD DIPSFSSENV SNQVHQPSNV  60
REFERDESYF EGSSSRETGG RENRQVVRER FAFKTISEIE VLDDGYRWRK YGKKMVKNNP  120
NPRYVYIYIY IYIYIYICL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g13730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-114AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503384.12e-87probable WRKY transcription factor 50
TrEMBLA0A1S3UBP55e-86A0A1S3UBP5_VIGRR; probable WRKY transcription factor 50
STRINGGLYMA17G34210.28e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-15WRKY DNA-binding protein 50