PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g12190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 249aa    MW: 27201.3 Da    PI: 10.2965
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g12190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31171228359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h 
  Vradi06g12190.1 171 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 228
                      9************************9888****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.4E-8145167IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.1E-33157228IPR003657WRKY domain
PROSITE profilePS5081130.928164230IPR003657WRKY domain
SuperFamilySSF1182901.57E-26167229IPR003657WRKY domain
SMARTSM007745.1E-37169229IPR003657WRKY domain
PfamPF031067.5E-27171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAVELMGFPK IDDQKAIQEA ASEGLKGMEH LIRILSHQPS HLNTDLTDVT VSKFKKLISL  60
LNRTGHARFR RAPLQVNPPE PVQTPEPLQT LAPAHNPPSA PLHLPPPQTA NLSLPALFAS  120
PAPVHHASGS VTLDFTKPHN ALRNSKAKKN RVKKTVRVPA ISSKIADIPP DEYSWRKYGQ  180
KPIKGSPYPR GYYKCSTVRG CPARKHVERA PDDPAMLIVT YEGEHRHAVQ AAMQENAAGV  240
VGLVFEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211672271574Probable WRKY transcription factor 4
2lex_A3e-211672271574Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g12190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348314.11e-100WRKY transcription factor 50
RefseqXP_014503474.11e-100probable WRKY transcription factor 11
RefseqXP_028228137.11e-100probable WRKY transcription factor 17
SwissprotO221765e-58WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A1S3UBY86e-99A0A1S3UBY8_VIGRR; probable WRKY transcription factor 11
TrEMBLA0A445KX515e-99A0A445KX51_GLYSO; Putative WRKY transcription factor 11
TrEMBLA7LHI75e-99A7LHI7_SOYBN; Transcription factor (Fragment)
STRINGA0A087GIN74e-87(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-59WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]