PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g11150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 25458.9 Da PI: 7.8068 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.1 | 4.2e-29 | 107 | 166 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YY Ct + +Cpvkk+v+r+aed ++++ tYeg+Hnh+ Vradi06g11150.1 107 MNDGCQWRKYGQKIAKGNPCPRAYYXCTVSpSCPVKKQVQRCAEDMSILVSTYEGTHNHP 166 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00860 | 3.1E-11 | 12 | 85 | IPR006043 | Xanthine/uracil/vitamin C permease |
SuperFamily | SSF118290 | 3.92E-26 | 104 | 168 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.2E-29 | 105 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.221 | 106 | 168 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-33 | 107 | 167 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 108 | 166 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MPKCWCQSDA AEAILLGFQH YIVMLIPTAL XPQMGGGNEE KAKVIQTLLF VAGINTLLQT 60 LFGTRLPAVI GGSYTYVATT ISIILASRFS DEPDPAEGLM LLLHHIMNDG CQWRKYGQKI 120 AKGNPCPRAY YXCTVSPSCP VKKQVQRCAE DMSILVSTYE GTHNHPLPTS ATTIAYTTSA 180 AASMLQSPSL TTQLGLVNSD TVPLLSSNNV LYNLNALNFT SSYHHVSKSP HLFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 103 | 168 | 10 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g11150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-120 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022633693.1 | 6e-92 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A3Q0EPA5 | 1e-90 | A0A3Q0EPA5_VIGRR; probable WRKY transcription factor 61 | ||||
STRING | XP_007153834.1 | 8e-76 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 9e-39 | WRKY DNA-binding protein 61 |