PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g10060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 341aa    MW: 37066.1 Da    PI: 6.5108
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g10060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.7e-13176227455
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                       kr rrk +NRe+ArrsR+RK+a ++ Le  v+ L +eN+ L k+l   +++
  Vradi06g10060.1 176 TKRLRRKDSNRESARRSRRRKQAHLADLEWQVERLRQENSHLFKQLRDASQQ 227
                      69****************************************9766555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-14173237IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.323175238IPR004827Basic-leucine zipper domain
PfamPF001704.9E-11176223IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-8177213No hitNo description
SuperFamilySSF579593.56E-10177227No hitNo description
CDDcd147021.29E-8178229No hitNo description
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.109.3E-6214247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEAKLGGGAG VMAATFDEFK WISFMFDHDI NDDIKPCKLD PFTGASGHLN DAFENLVLRH  60
RPLLAGDQAL IRSGKCQYAR HDGGDMKDAV TGFSSCGGIT DGRVFHSQNL APVQSAISAT  120
IDSQSSICGT PVSGNKPNGR DNEVKGATTT SGSSRDPSDE DDEAGLCEQS TNAVDTKRLR  180
RKDSNRESAR RSRRRKQAHL ADLEWQVERL RQENSHLFKQ LRDASQQFRD ADTNNRVLKS  240
DVEALRAKVK LAEDMVRRGT IPPLNNQILP NLSELSNMNN LRGMAHVSPT ITVHGNDGAS  300
YGAGITLSGH NSPLELGNLD ISCTDFNTDN AVSSITTMWP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179195RRKDSNRESARRSRRRK
2189196RRSRRRKQ
3191196SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g10060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-127AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503722.10.0basic leucine zipper 9
SwissprotQ9FUD35e-54BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A0L9V0E60.0A0A0L9V0E6_PHAAN; Uncharacterized protein
STRINGGLYMA17G24602.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-46basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]