PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g08690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 674aa    MW: 73145.1 Da    PI: 6.2082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g08690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07259279526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  Vradi06g08690.1 259 PCPEFRK-GSCSKGDACEYAHG 279
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.3E-1742168IPR020683Ankyrin repeat-containing domain
PfamPF127968.7E-855128IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-1656167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.92559168IPR020683Ankyrin repeat-containing domain
SMARTSM002480.415989IPR002110Ankyrin repeat
CDDcd002042.07E-1361137No hitNo description
SMARTSM002482.1E-494126IPR002110Ankyrin repeat
PROSITE profilePS5008812.52994129IPR002110Ankyrin repeat
SMARTSM003568.6E-5254280IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5259279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094259281IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.991289313IPR000571Zinc finger, CCCH-type
SMARTSM0035616289312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MEDECVKEEM HHRISALLEF SAADDLIGFK DAVEKEGQDV DGVGLWYGRR AGSKKIGYEE  60
RTPLMVAATF GSLDVSAYIL GTGGVDVNRA SRSDGATALH CAVAGGSAAS VEVVKLLLDA  120
SAEVNAVDAD GNRPIDLIVS VANSIFSPRA RVLAALLEGT CDAAAADQTY FSLPQVIDQI  180
EEQRQEMTTS RVSKDYPIDL SLPDIKNGIY GTDEFRMYTF KVKPCSRAYS HDWTECPFVH  240
PGENARRRDP RKYHYSCVPC PEFRKGSCSK GDACEYAHGI FECWLHPAQY RTRLCKDESG  300
CTRRVCFFAH KPEELRPLYA STGSAIPSPR SYSAGASALE MGSISPIALG SPSVLIPTSS  360
TPPLTPSGAS SPITGSIWSQ SNVAVPTLLL PKSRLKTAST ARDIDLDFEL LGLEAHRRRQ  420
QLMMDDMSGL SSPNWKNSMP NSPSFPVSMS DHIGELNRLS GVKPSNLDDT FGSLEQSILS  480
KFHGISLDVA GPQLQSPTGI QMRSNMNQQL GGYSSGLSTS NMVGSRSFRV DPSAEGASVV  540
LNPRAAAFAK RSHSFIERSM VNHHSELPSP KVSTFSHWGS PDGKLDWTMN GDELNKLRKS  600
SSFGFRSSNS PLTKDSTTMP ANVDDEPDVS WVNSLVKDAP PEAGVEDQRK QCHNGTEAIP  660
ACQRLHVLTL HEF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g08690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505073.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1S3UGB20.0A0A1S3UGB2_VIGRR; zinc finger CCCH domain-containing protein 66
STRINGXP_007142205.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein