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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g07040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27412.4 Da PI: 8.8665 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90 | 2e-28 | 118 | 177 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YY Ct + +Cpvkk+v+r aed ++++ tYeg+Hnh+ Vradi06g07040.1 118 MNDGCQWRKYGQKIAKGNPCPRAYYXCTVSpSCPVKKQVQRYAEDMSILVGTYEGTHNHP 177 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-27 | 117 | 179 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-25 | 117 | 179 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-30 | 118 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.452 | 118 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 119 | 177 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSGRAMRQIA QVLQAQQAQQ AEQAPRPRVG MNEFLCHSLA KFIGKATPDE ADDWICILEK 60 IFEAVECTKG QNLVFATYVL AGEADCGYRR RKVWQEDAKK ALKLFKLLTI LLYLRSEMND 120 GCQWRKYGQK IAKGNPCPRA YYXCTVSPSC PVKKQVQRYA EDMSILVGTY EGTHNHPLPT 180 SATTIAYITS VVASMLQSPS LTTQLGLVNS DIVPLLSSNN VLYNLNALNF TSSYHHVSKS 240 PHLFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 118 | 179 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g07040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-106 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022633693.1 | 2e-86 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A3Q0EPA5 | 5e-85 | A0A3Q0EPA5_VIGRR; probable WRKY transcription factor 61 | ||||
STRING | XP_007153834.1 | 9e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-38 | WRKY DNA-binding protein 9 |