PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g06390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 716aa MW: 79674.2 Da PI: 7.9492 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.5 | 5.7e-19 | 317 | 417 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvl+ sd+++ grlvlpk++ae++ +++ e+ l ++d +g++W++++++ +++s++yvl+ G +a +L++gD+v+F++++ ++ Vradi06g06390.1 317 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLHMKDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQALKLNAGDIVIFSRID-PGG 408 99**************************555556677***************9989999999***9.********************987.777 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 ++v++++r+ Vradi06g06390.1 409 KFVLGFRRA 417 779999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-30 | 314 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-20 | 314 | 416 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.02E-24 | 315 | 416 | No hit | No description |
SMART | SM01019 | 7.3E-24 | 317 | 418 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.884 | 317 | 418 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-16 | 317 | 417 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MELDVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC 60 NFCNKSIHCG CTISRFSFEY LDFGGIGCLT CLRASPFPLI QETGNSIRSI RSVKNHASDR 120 HTEHIDDRLF LDGSSKRKPM HMRRIVDGRE SSRWPQVKRD DIQSCIDLNR EEMRFSNVMK 180 PSNHSLKFTA LENNRPTWEN RSMHRSSSMN ISLGASSGNS VLPSALEIAE GRFDGKTSSS 240 SFHKGKRPLS IMPKPLMNAI NMNMESSNGM ISQERVARPP TDGKGKNMLL SRYWPRITDQ 300 ELQQLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLHMKDVK 360 GNEWTFQFRF WPNNNSRMYV LEGVTPCIQA LKLNAGDIVI FSRIDPGGKF VLGFRRASDS 420 TDTQDASAAH SIVLSTKETT FSGATAGNSY HDLLQTRKGN GDPYLNKCSE HFRLSTGIAE 480 RLRTENSEMV NKDSVQLPIS VSEKTQNIGP MCKRLLIHNE DAMELRVTWE EAQDLLCPAP 540 SIKSNIVTIE DQEFEEYEEP PVFGKRTRIN ARSSGSLSLA SEEVSPKELD NISVIRKGVL 600 DDDGDSSAGA TTKYPRHRSG CICIVCIQAS SGKGRHSPPC ITVKRRVDTL LARKKQLLGT 660 QKDDDIYDGD EGDGACLSEK EGNINKGCLK KGELSAGQID LNCRPDLDED MQVDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-66 | 295 | 424 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g06390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503048.1 | 0.0 | B3 domain-containing transcription repressor VAL2-like | ||||
TrEMBL | A0A1S3UAJ2 | 0.0 | A0A1S3UAJ2_VIGRR; B3 domain-containing transcription repressor VAL2-like | ||||
STRING | XP_007142042.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15634 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-160 | HSI2-like 1 |