PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g06060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 764aa    MW: 84688.9 Da    PI: 6.5093
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g06060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.1e-20128255199
                      EEEE-..-HHHHTT-EE--HHH.HTT.................................---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................................ggkkeesktltledesgrsWevkliyrkksgryvl 61 
                      f+k+lt sd++++g +++p++ ae+                                  +++++  ++l+ +d++  +W++++i+r++++r++l
  Vradi06g06060.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfpplvvfifslcvsilvrhiyifssfsavqdfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLL 219
                      99*******************************************************8544443..48************************** PP

                      -TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  62 tkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      t+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  Vradi06g06060.1 220 TTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 255
                      **********************..8899999****997 PP
2Auxin_resp110.61.6e-36280369183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserr...l...sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr   +   +Gt++g+sdldpvrWpnS+Wrs+k
  Vradi06g06060.1 280 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRppsFcryMGTITGISDLDPVRWPNSHWRSVK 369
                      79*********************************9789****************99964431445*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-43112283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-38121269IPR015300DNA-binding pseudobarrel domain
CDDcd100176.56E-18127254No hitNo description
PfamPF023621.5E-19128255IPR003340B3 DNA binding domain
SMARTSM010194.8E-20128256IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433193256IPR003340B3 DNA binding domain
PfamPF065078.6E-32280369IPR010525Auxin response factor
PfamPF023091.0E-7634721IPR033389AUX/IAA domain
SuperFamilySSF542775.4E-7635711No hitNo description
PROSITE profilePS5174524.155637721IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR  60
EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP  120
SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLVVF IFSLCVSILV RHIYIFSSFS  180
AVQDFSQQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF  240
IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF TVFYNPRASP  300
SEFVIPLSKY IKAVYHTRVS VGMRFRMLFE TEESSVRRPP SFCRYMGTIT GISDLDPVRW  360
PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW HPGTSSFHDG  420
RDEATNGLMW LRGGPGDQGL NSPSFQGSGL LPWMQQRMDP TLLGIDHNQQ YQAMFASDFL  480
DSSMKFPATV SPGQNMLSSL CPEGSGSLLN LSRSGQSMLT DQQLPQQPWA PKFTPLQVNT  540
FGNSMPHVQY SGKDTAMVSP HCNSDTQNPI LFGVNIDSSG LLLPTTVPRY TTASADTDAS  600
AMPLVESGFQ TPLYPCVQDS SELLRSAGQV DPQNQTRTFV KVYKSGSVGR SLDISRFSSY  660
HELREELAQM FGIEGKLEDP LRSGWQLVFV DRENDVLLLG DDPWESFVNN VWYIKILSPE  720
DIQKMGEQAV ESLGPSSGQR LNSTGADSHE IVSGLPSIGS LEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1531139041388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g06060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747631.10.0auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A151U9P40.0A0A151U9P4_CAJCA; Auxin response factor
STRINGXP_007141982.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]