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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g04330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26557.1 Da PI: 10.3849 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G ++W++I++ ++ gR++k+c++rw + Vradi06g04330.1 10 KGSWSPQEDATLLKLVNQYGARNWSLISSSIP-GRSGKSCRLRWCNQ 55 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.5e-17 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T Ed+++++a++ +G++ W+tI+r ++ gRt++ +k++w++ Vradi06g04330.1 64 PFTSAEDQIIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 106 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.592 | 5 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-30 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-16 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-18 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 11 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.54E-14 | 12 | 54 | No hit | No description |
PROSITE profile | PS51294 | 25.245 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 64 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-11 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-23 | 64 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTDVGNDRVK GSWSPQEDAT LLKLVNQYGA RNWSLISSSI PGRSGKSCRL RWCNQLSPEV 60 QHRPFTSAED QIIIKAHAIH GNKWATISRL LPGRTDNAIK NHWNSTLRRR STMSQSAAAA 120 SPNTKRASPS EWDHPFKKQL VEKEKEQERI AIPVITPLSL FPFGEKSDRK VEEEEKKVWE 180 EFKVNNNNNK ISNQDYFLQV MRRMIADEVR NYLHSLCKRR EYVHPNLHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-38 | 7 | 110 | 4 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g04330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502988.1 | 1e-172 | transcription factor MYB1 | ||||
Swissprot | O23160 | 7e-52 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A1S3UAD3 | 1e-170 | A0A1S3UAD3_VIGRR; transcription factor MYB1 | ||||
STRING | XP_007141751.1 | 1e-95 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-54 | myb domain protein 73 |
Publications ? help Back to Top | |||
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