PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g03050.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YC

Protein Properties

Length: 235aa MW: 26581.1 Da PI: 6.4037

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g03050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.8	2.9e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div + Vradi06g03050.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-20	4	88	IPR009072	Histone-fold
Pfam	PF00808	1.7E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLRRGAK 60 TMNAFHLKQC VQTFNVFDFL KDIVSKVPDL GGSAANCDDH TVKRRKVAED DNDSHEEPKR 120 NNKQNEKQTQ SNESMENASS PEEVKQTFPV SKPAQVSIRN FDLNMDPDEN MESLASPTAV 180 PTSSSAKSIS EEKHHEEYPG WSLFISSFSS FHMLVLHVFE RAYLWNKLTS LLAE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g03050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-127	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504172.1	1e-142	dr1-associated corepressor
TrEMBL	A0A1S3UDQ9	1e-140	A0A1S3UDQ9_VIGRR; dr1-associated corepressor
STRING	XP_007141534.1	1e-117	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-56	nuclear factor Y, subunit C11