PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 259aa MW: 29788.9 Da PI: 7.3939

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g02880.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	75	1.3e-23	26	84	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+ +++++sw +++++fvv + efa+++Lp+yFkh+nf+SFvRQLn+Y Vradi06g02880.1 26 FLTKTYQLVDDPLTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTY 84 9*********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-26	17	85	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.1E-34	22	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.17E-22	23	101	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.5E-13	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-20	26	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-13	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-13	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008356	Biological Process	asymmetric cell division
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAFTLDRCED SMVFTMDSQK SVPAPFLTKT YQLVDDPLTD HIVSWGDDET TFVVRRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYVRIIKG SKHLLCEIHR RKTPHPYQQH YHMHDQPPQL 120 LQPDENLCWI DTPPLPSPKP GNDILTALSE DNQRLRRKNF MLLSELTHMK NLYNDIIYFI 180 QNHVSPASYE QRSSSAILKL VELESSPQSP NLIRPAKSHI MEKSLVSSSD EPNGSVKLFG 240 VPLCGKKRLH PGNLDQQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-14	16	84	11	78	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00187	DAP	Transfer from AT1G46264	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g02880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504175.1	0.0	heat stress transcription factor B-4b
Swissprot	Q9C635	3e-70	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A1S3UDR2	0.0	A0A1S3UDR2_VIGRR; heat stress transcription factor B-4b
STRING	XP_007141514.1	1e-174	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1612	33	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-72	heat shock transcription factor B4