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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi06g02730.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
SRS |
| Protein Properties |
Length: 331aa MW: 33717.9 Da PI: 8.3953 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi06g02730.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 220.7 | 3.1e-68 | 106 | 266 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++ a +s +++ +k++r +++++++s+t++s++++
Vradi06g02730.1 106 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTSNTTP 198
7889*************************************************99999999999999999999986.88899999********* PP
DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+
Vradi06g02730.1 199 PRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 266
******999********************************************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MEDSGAFADW AGTGSSTAAA AGGRAVPVDD LSLGFNAGPA APAAATGPTT GMWPRGGGIQ 60
FWQDQGPHQS HYMKKQQQQG LLDQSNTSSG NLVQTSGGLT ASGTSSGGTT CQDCGNQAKK 120
DCTNRRCRTC CKSRGFDCPT HVKSTWVPAA RRRERQLMTA ATAAVAGSSG STSGTKKPRL 180
IASQTTTTSH TSTSNTTPPR SFDTSSSHQD AGFKESLPGQ VRAPAVFKCV RVTAVEDGQD 240
EYAYQAVVKI GGHVFKGFLY DQGVENRDVY PNLSELHLGG GNGGSGSGGS GGVGRNGVSS 300
SSPMMDPSDV YAGSGGGLLG GSSAYGNPMN *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 1e-68 | Lateral root primordium (LRP) protein-related |
