PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g01200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 553aa    MW: 59920 Da    PI: 8.165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g01200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.8e-32243300260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d+++ ei+Y+g+H+h+k
  Vradi06g01200.1 243 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIAEIIYKGTHDHPK 300
                      8****************************************.***************85 PP
2WRKY106.31.6e-33374432159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Vradi06g01200.1 374 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 432
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.835237301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-27237301IPR003657WRKY domain
SuperFamilySSF1182905.1E-25239301IPR003657WRKY domain
SMARTSM007743.7E-34242300IPR003657WRKY domain
PfamPF031062.1E-24243299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37359434IPR003657WRKY domain
SuperFamilySSF1182901.96E-29366434IPR003657WRKY domain
PROSITE profilePS5081138.825369434IPR003657WRKY domain
SMARTSM007743.1E-39374433IPR003657WRKY domain
PfamPF031063.3E-26375432IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDASAATTSA EPRPSSELCL NGASEDPNRG GPGQNSTARY KLIAPAKLPI SRSPCITIPP  60
GLTSWKMVSL ELALYSFDPS LSSTFFVYGS VESSPTTGSL RKLQQTVHGS KASATFAVTT  120
ACFNTNTVED RKSSFFEFKP LNRLNMVPAD FNNHVIKQST QAEGLGKAQS FVSSPLVESE  180
IAVPANELSL SSPVQMVSSS PSAPVDVDLD DVNHKSNTAT GLQESHVEVR GNGISVAAEK  240
TSDDGYNWRK YGQKLVKGSE FPRSYYKCTH PNCEVKKLFE RSHDGQIAEI IYKGTHDHPK  300
PQPSCRYSTG TIMSIQVERS DKDSSLAGLD GNTSQMLIIA SIKMELGNVD ITPVVKPIRE  360
PRVVVQTLSE VDILDDGYRW RKYGQKVVRG NPNPRSYYKC TNAGCPVRKH VERASHDPKA  420
VITTYEGKHN HDVPAAKNSS HDMAVAAAGQ TRIKLEESDT ISLDLGMGIS SAAEHRSNAQ  480
GKIMHSEFGN TQTHTSNSNF KFVHTSSAPV YFGVLNNSSN PYGSRDNRSD GSALNHASYP  540
CPQSMGRILM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37243435878Probable WRKY transcription factor 4
2lex_A1e-37243435878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g01200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504899.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-152WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S3UG240.0A0A1S3UG24_VIGRR; probable WRKY transcription factor 20 isoform X1
STRINGXP_007142379.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-149WRKY family protein