PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g00660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SAP
Protein Properties Length: 366aa    MW: 41504.2 Da    PI: 6.5099
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g00660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP516.71.1e-157136391455
              SAP  91 llwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvs 184
                      +lw++ltrriWrrt ++rdtW+ eyi +hrta+nf+t+r s++t++fdp+     ++   l+Crclalsd+ la+Gf+dG+vr+fdlet  hvs
  Vradi06g00660.1   1 MLWEHLTRRIWRRTFRVRDTWHAEYINWHRTATNFETGRLSFMTPRFDPS-----EHRRGLICRCLALSDTRLACGFVDGTVRVFDLETYDHVS 89 
                      59***********************************************7.....35689********************************** PP

              SAP 185 tflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaetee 278
                      t+l++h++++G++sr+vsGi+i+ds ++fa+ldGdi+v++i+++g+++arra+ G v+n G+lv faG+ r wvGl+aG++  af++W+ae+ e
  Vradi06g00660.1  90 TYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHGQSQARRAVSGFVMNSGVLVAFAGTRRRWVGLFAGIAEGAFQVWNAESGE 183
                      ********************************************************************************************** PP

              SAP 279 lvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrve 372
                      + f+GG+ltdPe+vmGWhmltel++ vGrvrvte e++vaCtslrl++f+  n++v+lr+e +++G++vss+d+s+ea+vvv++ Gv+tv rv 
  Vradi06g00660.1 184 RLFLGGTLTDPETVMGWHMLTELVDPVGRVRVTEDEFVVACTSLRLICFNAWNPEVLLRDEMSASGFVVSSMDVSSEAFVVVERDGVGTVWRVR 277
                      ********************************************************************************************** PP

              SAP 373 nleevcrfrvrg.aqrgvlgCvnggyalvyagg...vlrvWeiekkeg.ylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                      ++e ++rf++r+ + rg++gC+n+gy+++y++     lrvW+ie++eg +++ +  r+gevn++v ddrhva+ss+  +i+lldfg+q
  Vradi06g00660.1 278 TMELMSRFELRSsWVRGLWGCMNLGYVVTYSPNprpFLRVWNIEQEEGrLCVRVFLRAGEVNSMVGDDRHVAISSN--NINLLDFGVQ 363
                      ************9*******************9999*********9999************************986..69******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.108.1E-1350116IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509787.14E-1458115IPR017986WD40-repeat-containing domain
SuperFamilySSF509787.14E-14164353IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.108.1E-13165354IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLWEHLTRRI WRRTFRVRDT WHAEYINWHR TATNFETGRL SFMTPRFDPS EHRRGLICRC  60
LALSDTRLAC GFVDGTVRVF DLETYDHVST YLSDHGHLFG PYSRSVSGII ITDSDITFAR  120
LDGDIYVDAI NVHGQSQARR AVSGFVMNSG VLVAFAGTRR RWVGLFAGIA EGAFQVWNAE  180
SGERLFLGGT LTDPETVMGW HMLTELVDPV GRVRVTEDEF VVACTSLRLI CFNAWNPEVL  240
LRDEMSASGF VVSSMDVSSE AFVVVERDGV GTVWRVRTME LMSRFELRSS WVRGLWGCMN  300
LGYVVTYSPN PRPFLRVWNI EQEEGRLCVR VFLRAGEVNS MVGDDRHVAI SSNNINLLDF  360
GVQNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g00660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502884.10.0transcriptional regulator STERILE APETALA
TrEMBLA0A1S3UA980.0A0A1S3UA98_VIGRR; transcriptional regulator STERILE APETALA
STRINGXP_007142480.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.12e-83SAP family protein