PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g22860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 456aa    MW: 50928.4 Da    PI: 6.5624
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g22860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.11.9e-87524442373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                      ++lLl+cA a++s+d +laq++++ l++ asp gd++qRl++ f++AL +r +r +++ ++   +++     + + +++++l  ++++ P+++f
  Vradi05g22860.1  52 EKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTI----QRRLMSVTELagYVDLIPWHRF 141
                      689***************************************************77766643322222....333334444466********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                      ++ + N+ I +a+ g +rvHi+Df+i++++QWp++++aLa+ pegppslRiT+     ++    + +++e+g rL +fA+  +vpfefnv+   
  Vradi05g22860.1 142 GYCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGPPSLRITVPFCRPHVpplVNVSIHEVGLRLGNFAKFRDVPFEFNVIgnt 235
                      ****************************************************9555334468999***************************** PP

             GRAS 182 ................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFler 256
                                       +  l+ l++ +L+++ +Eal++n++  l +l d++  +++    rd++L+l+k+l+P++v +v++++d++++s+  r
  Vradi05g22860.1 236 gpltpvelsdessnfhFEAMLSLLNPTTLNLRDDEALVINCQNWLRYLSDDRKGSRQslsLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSR 329
                      *******99999888555688999************************9987665555779********************************* PP

             GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                      ++ ++++ +  fd+le+ lp++s +r+  E   +g++i+n+++ eg +r+er e   + ++r++++G+ +vp+ +++  ++k ll +++  g+ 
  Vradi05g22860.1 330 ITTCFNHLWIPFDALETFLPKDSGQRAEFESD-IGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETIREVKGLLDEHA-SGWG 421
                      ********************************.********************************************************.8899 PP

             GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                      ++ e+g lvl+Wk+++ v+++aW
  Vradi05g22860.1 422 MKREEGMLVLTWKGNSCVFATAW 444
                      *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.525426IPR005202Transcription factor GRAS
PfamPF035146.6E-8552444IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MHVTSSHSHM KAELKGTSIS FQNPNTLFNT PQNPLSGALK GCLGSLDGAC IEKLLLHCAS  60
ALESNDITLA QQVMWVLNNV ASPVGDTNQR LTSWFLRALI SRASRICPTA MSFKGSNTIQ  120
RRLMSVTELA GYVDLIPWHR FGYCASNNEI FKAITGYQRV HILDFSITHC MQWPTFIDAL  180
AKNPEGPPSL RITVPFCRPH VPPLVNVSIH EVGLRLGNFA KFRDVPFEFN VIGNTGPLTP  240
VELSDESSNF HFEAMLSLLN PTTLNLRDDE ALVINCQNWL RYLSDDRKGS RQSLSLRDAF  300
LNLIKGLNPR IVLLVDEDCD LSASSLTSRI TTCFNHLWIP FDALETFLPK DSGQRAEFES  360
DIGQKIENII SFEGHQRIER LECGVQMSQR MKNVGYLSVP FCDETIREVK GLLDEHASGW  420
GMKREEGMLV LTWKGNSCVF ATAWVPCEIR DASLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-572244663474Protein SHORT-ROOT
5b3h_B4e-58174464420Protein SHORT-ROOT
5b3h_E4e-58174464420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g22860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498933.10.0scarecrow-like protein 32
TrEMBLA0A1S3TYT50.0A0A1S3TYT5_VIGRR; scarecrow-like protein 32
STRINGXP_007149938.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein