 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi05g21040.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
LBD |
| Protein Properties |
Length: 284aa MW: 31946.5 Da PI: 9.6543 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi05g21040.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 110.9 | 8.9e-35 | 14 | 112 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
aCaaCk++rrkC ++C+lap fp+ ++k+f n+hklFG+ ++++++k l++ +r+ a++s+++e+++ra+dPv G++++il lq+ ++++++el
Vradi05g21040.1 14 ACAACKYQRRKCGPNCILAPFFPHYRQKQFLNAHKLFGVGKITSMIKPLDPVNRNSAINSIIFESDMRAKDPVGGCFRTILYLQSVIASAESEL 107
7********************************************************************************************9 PP
DUF260 95 allke 99
+ l +
Vradi05g21040.1 108 QFLLQ 112
87655 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MEGGTSSSRS TIQACAACKY QRRKCGPNCI LAPFFPHYRQ KQFLNAHKLF GVGKITSMIK 60
PLDPVNRNSA INSIIFESDM RAKDPVGGCF RTILYLQSVI ASAESELQFL LQHLAFFRAQ 120
PLHSIATPQP PSSSHHPYHQ GMSLQESKQE LGKDPSQLQR QQQPKDPCFN YNALQEDMNV 180
SDIDNLILLN PFPLTALVWV HDQRGIGVVP NRSRFKSEGE WWVRSWPRSR RNTDRCYEKL 240
LLNWEEGEVV HDTRAAWWRG GVRAAAASVV FMGVKVKGVG VGV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
