PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g18660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 327aa    MW: 37233.9 Da    PI: 7.0415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g18660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-092664148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G +       +++  R++k+c++rw +yl
  Vradi05g18660.1 26 RGLWSPEEDEKLLRYINTHGHK-------RLQ--RCGKSCRLRWINYL 64
                     788*****************88.......887..************97 PP
2Myb_DNA-binding55.61.3e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Vradi05g18660.1  70 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 113
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3412164IPR017930Myb domain
SuperFamilySSF466894.79E-2523111IPR009057Homeodomain-like
SMARTSM007171.1E-72566IPR001005SANT/Myb domain
PfamPF002492.5E-82664IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-172771IPR009057Homeodomain-like
PROSITE profilePS5129426.46865119IPR017930Myb domain
SMARTSM007171.8E-1669117IPR001005SANT/Myb domain
PfamPF002498.5E-1670113IPR001005SANT/Myb domain
CDDcd001675.03E-1272112No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2672120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MFSVERVLAQ TLEMGHRCCS KQKIKRGLWS PEEDEKLLRY INTHGHKRLQ RCGKSCRLRW  60
INYLRPDLKR GSFTAEEEQI IIDIHRILGN RWAQIAKHLP GRTDNEVKNF WNSCIKKKLI  120
SQGLDPQTHN LLSSHRRSSA STISNMHKKS NPIFIMSSHT TNAPVETTFQ TFSSLPKPPL  180
NIVQTPSSII TSEYQTSPII SNKFSSDLPY ELLIDNGSNI CSPSYMNPTA VELSNNENIA  240
NWVSRVNVDD FSGQTLEEGT QVQVQQEKDK FYEDTVTDVR EANKGNLERS ASFESSNFDF  300
GLLESVLSSE FISHDLSCMD ELAWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29261197108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g18660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500881.20.0transcription factor MYB14
TrEMBLA0A1S3U4F50.0A0A1S3U4F5_VIGRR; transcription factor MYB14
STRINGXP_007149171.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-74myb domain protein 67