PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vradi05g18360.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 402aa MW: 44904.2 Da PI: 7.109

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g18360.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00089	352	371	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF ++ + +H++++ Vradi05g18360.1 352 CSQCGKSF-KPEKMYKHMKSC 371 ******.*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	1.6E-12	10	344	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MFIILLSIRY KSGYVWQDLL DDDLITPISD NEYILKGSQI HTTPFVWPPI ISIHGHFQSI 60 LHFSNNVKSL IKLDNFFDNA VATTPSLEEK KPVVCDIHAE KMCPQLQVVE DKEHHQQQHQ 120 QPPLSLAEEE SQIQPDQNSK TNSPTKGSSE ISQDSLVFSS DRSSVTDDDS SKVEEEKHLE 180 ITTGSEMHQE KLETCSLPSL YHNLLSKKGT HKDDQNKTHS PDSSLSTIST SSSQSSFTKI 240 RSNSTKVSNI FRNWITCGTV ETNDAALVIM NPAQTKISKE PSNIPESKAE ICKGDRLGGS 300 ERCFRTSWGH QDQKQQYGAR KSFDGEETNR SRKKLGDLLN QSSSKPFGGP ICSQCGKSFK 360 PEKMYKHMKS CKGMKALGKS APIVEEAQLP RSSTSSHTHY F*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MFIILLSIRY KSGYVWQDLL DDDLITPISD NEYILKGSQI HTTPFVWPPI ISIHGHFQSI  60
LHFSNNVKSL IKLDNFFDNA VATTPSLEEK KPVVCDIHAE KMCPQLQVVE DKEHHQQQHQ  120
QPPLSLAEEE SQIQPDQNSK TNSPTKGSSE ISQDSLVFSS DRSSVTDDDS SKVEEEKHLE  180
ITTGSEMHQE KLETCSLPSL YHNLLSKKGT HKDDQNKTHS PDSSLSTIST SSSQSSFTKI  240
RSNSTKVSNI FRNWITCGTV ETNDAALVIM NPAQTKISKE PSNIPESKAE ICKGDRLGGS  300
ERCFRTSWGH QDQKQQYGAR KSFDGEETNR SRKKLGDLLN QSSSKPFGGP ICSQCGKSFK  360
PEKMYKHMKS CKGMKALGKS APIVEEAQLP RSSTSSHTHY F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g18360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022637021.1	0.0	uncharacterized protein LOC106760568 isoform X1
TrEMBL	A0A3Q0F0N7	0.0	A0A3Q0F0N7_VIGRR; uncharacterized protein LOC106760568 isoform X1
STRING	XP_007149122.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20