PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g17920.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 469aa    MW: 52278.3 Da    PI: 6.1903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g17920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-104004401054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + RR ri +++ +L++l Pk+     k  s a++L +AveYIk+L
  Vradi05g17920.1 400 KVRRTRISERIKKLQDLFPKS----EKQTSTADMLDLAVEYIKDL 440
                      78******************8....577***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.887390440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-7396446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12397456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-9400445No hitNo description
PfamPF000105.5E-7400440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-12403457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
LWNHEGGYFK KLHKYVTAAT QNNNLRFLPS HLFTFFFSSL FLYVLFSSEP ELKDLKFGFQ  60
SAKSDMSVMY SPVFKYSDVE PQLRKNQEMD SSIGNPQQHC HQPNSGLLRY CSAPSSLLTS  120
LVHNNILDCV NEESFTSEIQ QHYVPSTSSE MDTMLSKLLP SNDGWNNSEA LQEFGSKPVK  180
QEIGESVPQG PPPQQQNEYS YGGSHLIYQS QEIQGLPNGS SSASGNAFGG SFDVVNTMAS  240
ENPLQSKMGA RNCSNLFRQK SSPAGFFSIE NDLAALREVD AFKANDVSNR QATTSTSGYS  300
GSLAFSSRPS SCLKKMPQIA ENENENCDQS RILVNEDGNS KFYIPSFTTE IWESSSFNAP  360
KTESDDEIMF STSNALESQF VTFHINKTMQ LTLSCLLSSK VRRTRISERI KKLQDLFPKS  420
EKQTSTADML DLAVEYIKDL RQQVKVLSDC KAKCKCSSNE SHCTRTCA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g17920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502421.10.0transcription factor bHLH130
RefseqXP_014502423.10.0transcription factor bHLH130
TrEMBLA0A1S3U8S60.0A0A1S3U8S6_VIGRR; transcription factor bHLH130
STRINGXP_007149053.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-26bHLH family protein