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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi05g17260.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
SRS |
| Protein Properties |
Length: 208aa MW: 22039.2 Da PI: 9.034 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi05g17260.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 83.5 | 5.3e-26 | 54 | 100 | 11 | 57 |
DUF702 11 CGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57
CGn+akkdC ++RCRtCCk rg+dC+thvkstWvp+ +rrer a
Vradi05g17260.1 54 CGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVA 100
******************************************76554 PP
|
| 2 | DUF702 | 68.3 | 2.5e-21 | 113 | 164 | 102 | 153 |
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++slP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
Vradi05g17260.1 113 KQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 164
467***********************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MLGLRDLVLI AQTPSLHQGQ PISENQTPNL PLPSSAALSV GFGIFPLLTA TPYCGNRAKK 60
DCIFRRCRTC CKGRGYDCST HVKSTWVPSI RRREREMVVA PAGGVGGGNA SFKQSLPGHV 120
RAPAVFKCHR VSAIGNGEDE FAYLATVHIS GHVFKGFLYD HGVDGKIANA VPCVSELQLG 180
NNCSGKNREC SSAIGLPNNN AYPASAT*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 1e-154 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
