PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g16860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 364aa    MW: 40778.2 Da    PI: 7.5235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g16860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05205222320
                      ETTTTEEESSHHHHHHHH CS
          zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                      C+ C+ksF+r  nL+ H+
  Vradi05g16860.1 205 CSVCSKSFNRYNNLQMHM 222
                      *****************9 PP
2zf-C2H214.97.8e-05287309123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C +C+k+F  k + ++H +++
  Vradi05g16860.1 287 YMCRKCDKTFAVKGDWRTHEKNC 309
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.42E-6196225No hitNo description
PfamPF139124.0E-5203222IPR007087Zinc finger, C2H2
SMARTSM003550.44203225IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699203230IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-5203222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-6271307No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5283307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035533287307IPR015880Zinc finger, C2H2-like
SMARTSM00355200313336IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLQYIYTQLY SYWPKIRKTI CAFTMTDPHS NLYAGTFNFM PLYSHRSSFT SQPNHFSSYP  60
LSYSNITNTT DIVQSETFSS SCAAPPSPPL REALPLISLI KHKENEPSNA ACEAEEEGHK  120
KGDMDETLLT EDADDETVAV ALHIGLPSVD SSDLLGSGKI SACAQMGEKG EVSVVSGHPL  180
DRLNKVQYWI PTPSQILIGP TQFLCSVCSK SFNRYNNLQM HMWGHGSQYR KGPDSLKGTQ  240
PSAMLRLPCF CCAPGCKHNI DHPRARPLKD FRTLQTHYKR KHGIKPYMCR KCDKTFAVKG  300
DWRTHEKNCG KIWYCLCGSD FKHKRSLKDH IKAFGHGHGA VDIDCMQEDE ATSEIEHDGD  360
SSM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g16860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500005.20.0zinc finger protein WIP2
SwissprotQ8W0311e-115ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A1S3U1W00.0A0A1S3U1W0_VIGRR; zinc finger protein WIP2
STRINGXP_007148861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]