PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vradi05g15050.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 110aa MW: 11878.2 Da PI: 5.4638

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g15050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	67.4	4.7e-21	2	43	113	154
DUF702 113 avfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a+frcv+v+svdd+ +e+aYqt+v+igGhvf+GiLydqG+e+ Vradi05g15050.1 2 AMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQ 43 99**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.8E-17	2	42	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.0E-19	2	41	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MAMFRCVQVR SVDDAVNEIA YQTSVNIGGH VFSGILYDQG PEQSYNINKG ESSTALVDEH 60 QNASIHSRDS SGVTIASAGH ADPLFPPPPY PFPLASFRPG MPYFTYPRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g15050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	3e-87	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022636035.1	3e-76	protein SHI RELATED SEQUENCE 3-like isoform X1
Refseq	XP_022636036.1	4e-76	protein SHI RELATED SEQUENCE 3-like isoform X2
TrEMBL	A0A3Q0EWA6	7e-75	A0A3Q0EWA6_VIGRR; protein SHI RELATED SEQUENCE 3-like isoform X1
TrEMBL	A0A3Q0EXZ9	9e-75	A0A3Q0EXZ9_VIGRR; protein SHI RELATED SEQUENCE 3-like isoform X2
STRING	XP_007135936.1	3e-50	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22692	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-16	SHI-related sequence 5