PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g13840.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 458aa    MW: 52211.7 Da    PI: 6.1352
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g13840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.71.5e-26176241171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++l++ +++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  Vradi05g13840.1 176 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIQWKG 241
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-28173242IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-17176239IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-34176241IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.7E-25178241IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.39E-35252360No hitNo description
SuperFamilySSF1440741.86E-25253360No hitNo description
PfamPF164214.9E-24257357IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
AIQSHLISIS HHSLFTQQHI SFLFVSKFII SFSPLFHFPV LYNSVAVTSL TPALSFCFPN  60
PFFSLLMSTS GQDHHQPHDP PHPSQFKFHL LHSPSHISPL SHSIFPNFLP SQRYESSHRS  120
NLEVVSDTSK TVYLPSPVQT QSTERGKQNV KSRNTKSGTH RPSAGSPNST VGNNCRYDSS  180
LGLLTKKFVS LIQDARDGTL DLNKTAEILE VQKRRIYDIT NVLEGVGLIE KTSKNHIQWK  240
GCDGLGPREL ENQINSLKAE VESLYARECE LDDCIRKKQE LLRNLEESES SQKYLFLTKE  300
EILSLPCFQN QEIIAIKAPK ASFIEVPDPD EVESVFRQRQ YKMIVRSATG PIYLYLLSKD  360
DCKYEDDSVK RVKLMDPSWN SEQCRKRGVG LLESHDDKQN TSESFNFHES QASGIQEITP  420
TDFEMEDDYW FQSDPGVRLT QLWENEPIIP IEELQDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-25172247376PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g13840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500615.10.0transcription factor E2FC
TrEMBLA0A1S3U3L40.0A0A1S3U3L4_VIGRR; transcription factor E2FC
STRINGXP_007136084.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.17e-89E2F/DP family protein