 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi05g13120.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
C2H2 |
| Protein Properties |
Length: 324aa MW: 35498.6 Da PI: 10.3082 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi05g13120.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.1 | 0.00028 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+k + +s+ k H +t+
Vradi05g13120.1 107 WKCERCSKKYAVQSDWKAHTKTC 129
58*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MAEPQNPSPF THSSATEIAL QPQPLPLPKR KRNLPGMPGF QRDQNLQLHR RGHNLPWKLR 60
QRGSKEPRKK AYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCE RCSKKYAVQS 120
DWKAHTKTCG SREYRCDCGT LFSRNSRKAK EAVTDVSKSN LLRDKQHPFQ FQFLHYCFCK 180
CVGTVHNNNS FTFSITVAIN FLILQPPQMG ASTASLLRGL GLATTSPSSL AKDEGFNISA 240
TTTAQWNGQI KQENQPMVDN LGLGLPCGSD VMMGPSTPFV GQPMTRDLLG LSIGGGASRG 300
GLSALVTSFG GNFDSPGDGG VHR*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 57 | 69 | KLRQRGSKEPRKK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 1e-165 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
