PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g10960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 486aa    MW: 54000.9 Da    PI: 7.4335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g10960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.6e-30145202258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      +Dgy+WrKYGqK+ ++++ pr+Y++C++a gCpvkkkv+rs edp+++++tYegeHnh
  Vradi05g10960.1 145 RDGYQWRKYGQKVTRDNPSPRAYFKCSYApGCPVKKKVQRSVEDPSLLVTTYEGEHNH 202
                      7***************************99**************************** PP
2WRKY83.81.6e-26318377158
                      ---SS-EEEEEEE-.-TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKe.vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      ++Dgy+W+KYGqK+  k+++ pr+YY+C+ a +Cpvkkkv+rs +d+++v+ tYeg+Hnh
  Vradi05g10960.1 318 VKDGYEWKKYGQKKtTKDNPSPRAYYKCALApTCPVKKKVQRSIQDKSIVVATYEGKHNH 377
                      58**********863699***********999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-29138203IPR003657WRKY domain
SuperFamilySSF1182902.62E-25141203IPR003657WRKY domain
SMARTSM007741.6E-35144204IPR003657WRKY domain
PfamPF031065.1E-25146202IPR003657WRKY domain
PROSITE profilePS5081126.234146205IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-26313379IPR003657WRKY domain
PROSITE profilePS5081123.674313380IPR003657WRKY domain
SuperFamilySSF1182906.41E-22316380IPR003657WRKY domain
SMARTSM007743.5E-26318379IPR003657WRKY domain
PfamPF031063.7E-21319377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSLNSEANLS SMEPTCVDTS LNLNVIPSSH TDIAGEVLVE ELRRLNCENK MLTAMLNQVY  60
ENYAALQKHL SEFKRLKNAN FDKEETASLK RKVDSENCAN LFCVNALTEC SSEEETFKKP  120
KQSTTPKVHK VFVRTDASDT SLYVRDGYQW RKYGQKVTRD NPSPRAYFKC SYAPGCPVKK  180
KVQRSVEDPS LLVTTYEGEH NHGEHQTEIS GNSGKSESGE ALELVQSRVV DMNGQKSLIQ  240
QFLVQQMANS LTRDPNFTAA LASAISGNLH HTSTPKRATY ERAESYSTND AGNYEQEMPE  300
ASTYISTMQK VAILAKMVKD GYEWKKYGQK KTTKDNPSPR AYYKCALAPT CPVKKKVQRS  360
IQDKSIVVAT YEGKHNHGFP FRDLFKPSSV TPEASIMDND LPMTNISNDI NIDLCLCNRV  420
PTDVTDKQQK DGGSNMKALE CISSLLKDPN FIAPLAEAVV LSINSQSEQV GLNLSLGLPQ  480
SDLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201463801677Probable WRKY transcription factor 4
2lex_A1e-201463801677Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g10960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500261.10.0probable WRKY transcription factor 40
SwissprotQ9SAH71e-62WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A1S3U2M50.0A0A1S3U2M5_VIGRR; probable WRKY transcription factor 40
STRINGXP_007136948.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.16e-65WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  3. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  5. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  6. Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L
    Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(7): p. 1568-1582
    [PMID:27328696]
  7. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  8. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]
  9. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]
  10. Zhang S, et al.
    The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.
    Plant Physiol., 2017. 173(4): p. 2294-2307
    [PMID:28250067]
  11. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]