PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g10800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 578aa    MW: 66189.2 Da    PI: 9.2714
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g10800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.2e-106696434
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34
                      k  rr+++NReAAr+sR+RKka++++Le  
  Vradi05g10800.1 66 NKMRRRLAQNREAARKSRLRKKAYVKQLESS 96
                     57889***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-75998No hitNo description
SMARTSM003384.1E-462123IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.61165100IPR004827Basic-leucine zipper domain
PfamPF001702.4E-766100IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.46E-667100No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
PfamPF141442.0E-25156229IPR025422Transcription factor TGA like domain
SuperFamilySSF465657.59E-23318451IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.0E-20378453IPR001623DnaJ domain
SMARTSM002711.3E-15383447IPR001623DnaJ domain
PROSITE profilePS5007616.782384455IPR001623DnaJ domain
PfamPF002266.9E-18385452IPR001623DnaJ domain
CDDcd062573.41E-14385444IPR001623DnaJ domain
PRINTSPR006251.3E-13386404IPR001623DnaJ domain
PRINTSPR006251.3E-13404419IPR001623DnaJ domain
PRINTSPR006251.3E-13427447IPR001623DnaJ domain
PROSITE patternPS006360432451IPR018253DnaJ domain, conserved site
PRINTSPR006251.3E-13473492IPR001623DnaJ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MKMDIYEPFQ QVGMWGDGFK VDGGLNSIAS PILMVDTNVE TKSEYIPQES REPSGGDQET  60
TDKDANKMRR RLAQNREAAR KSRLRKKAYV KQLESSRMKL VQLELEIGKA RKQGLYMGTA  120
LDASYIGSTS ETINPVIVAF EIEYGQWVEE QHRRNEELRH AFQTQAPEVQ LNVVVQSVLN  180
HYSNLFRMKA DAAKADVLYL LSGVWKASVE RIFLWIGGSR PSQLLNIIVP QLEPLTDQQI  240
VGIKNLRQSS QQAEDALSQG LEKLQQSLVL DMAVDPLGVG NFGLQMALAI DKFEALEGFV  300
SQSFKNLGET MSNLRTLCRP QTLFSFISCR HQFRSISFPN PNYKPRLSSP FLYSTIGSWG  360
SNPWFRVNQR RTVAKASNWA EQKSPYETLE LEGDADEDQI KIAYRRLAKF YHPDVYDGRG  420
NLEEGETAEA RFIKIQAAYE LLIDGERRRQ YDIDNRVNPM KASQAWMEWL IKKRKAFDQR  480
GDMAIAAWAE QQQRELNLRV RQLSRSKTDP DEVRRILARE KKASADYYSN TLKRHTLVLK  540
KRDLMRRKAE EEKKKTISRL LAAEGLELDD SDSDEAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g10800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466420.0BT146642.1 Lotus japonicus clone JCVI-FLLj-8M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501653.10.0transcription factor TGA3 isoform X1
TrEMBLA0A371FDF40.0A0A371FDF4_MUCPR; Transcription factor TGA3 (Fragment)
STRINGXP_007136203.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1021933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.29e-97TGACG motif-binding factor 4