PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g09030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 974aa    MW: 107626 Da    PI: 4.7582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g09030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-183177148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Vradi05g09030.1 31 KGQWTPEEDETLRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 77
                     799****************************9.************986 PP
2Myb_DNA-binding64.42.2e-2083129148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
  Vradi05g09030.1  83 KGPWSKEEDEIIIDLVNRYGPKKWSTIAQKLP-GRIGKQCRERWHNHL 129
                      79******************************.*************97 PP
3Myb_DNA-binding51.42.6e-16135177145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w+
  Vradi05g09030.1 135 KEAWTQEEELALIRAHQIYGNK-WAELAKILP-GRTDNAIKNHWN 177
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8962677IPR017930Myb domain
SuperFamilySSF466891.08E-152783IPR009057Homeodomain-like
SMARTSM007173.2E-153079IPR001005SANT/Myb domain
PfamPF002493.3E-163177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-243394IPR009057Homeodomain-like
CDDcd001675.35E-143477No hitNo description
PROSITE profilePS5129431.93678133IPR017930Myb domain
SuperFamilySSF466894.12E-3180176IPR009057Homeodomain-like
SMARTSM007171.4E-1882131IPR001005SANT/Myb domain
PfamPF002492.6E-1883129IPR001005SANT/Myb domain
CDDcd001672.34E-1685129No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2795137IPR009057Homeodomain-like
PROSITE profilePS5129421.065134184IPR017930Myb domain
SMARTSM007173.0E-16134182IPR001005SANT/Myb domain
PfamPF002491.5E-14135178IPR001005SANT/Myb domain
CDDcd001671.13E-12137177No hitNo description
Gene3DG3DSA:1.10.10.608.7E-22138184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MLTVSIASSV FYPYWILNLR RTTGPTRRST KGQWTPEEDE TLRKAVQRFK GKNWKKIAEC  60
FKDRTDVQCL HRWQKVLNPE LVKGPWSKEE DEIIIDLVNR YGPKKWSTIA QKLPGRIGKQ  120
CRERWHNHLN PTINKEAWTQ EEELALIRAH QIYGNKWAEL AKILPGRTDN AIKNHWNSSV  180
KKKLDSYLAS GLLTQLQNVP LAGNPNQPIA SVSSRLQQSG EDNGPRGTEG EEVSQCSQES  240
ANAGYFSSAR DMNSVALRTG EEYRPNEEPS QASCSEPYYV CLDEATVSLP DMADQEICVE  300
QKYSHNPGNS NNGEGQLDLI DLTNISSLDF GQESSQFQND CMMNVPFQTS VGLGVATTMQ  360
PTSIDSVKPE HMLMSDDECC RILFSEAISD ECFSSEDYNK CVNMVDLLGG PSFLCQSSLP  420
SVPSVVSSTG DRLMYTAEAN QLVGSEDQQF VSRTQDNIIY ASDLSSPPCI RRIDNTEMQE  480
PSDVVKDDSK LVPVNSFGCG SDAKSTSYVH TEQDTGALCY EPPRFPSLDI PFLSCDLIQS  540
GGDMQQEFSP LGIRQFMMSS MNCLTPFRLW DSPSRDDSPD ALLKSAAKTF TSTPSILKKR  600
NRDLLSPLSD KRIDKKLEIE MTSTLIKNFS RLDVMFDDNE AQGADLIPSS SMPKRDSGTS  660
VEDDKENCGQ AVKVESVGEK NKNAILDDKK SEKDSGDGSS REKIKQQPVS VDSAIENDGS  720
AAEEIVQQPS GVLVEHDVND LLMHSPDQVN LKSERVLSLS ARSKKNPCSR INSPSVWLKE  780
HERLSVAVTC IHSVSSSGPG ENSGDHTGND GGLETCSIFG GTPFRKSIES PSAWKSPWFI  840
NTFLSSPRID TEITIEDFGY FMSPGDRSYD AIGLMKQINE QTAAQYASAH EILGNETPKA  900
LPKGKSRNDG DEDREDIDPN NKRGDCSQSA SSALVERRVL DFSECGSPVK GDSSKSSAMS  960
FSSPTSYLLK GCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-69311846159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-69311846159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g09030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499625.10.0transcription factor MYB3R-1
TrEMBLA0A1S3U0U00.0A0A1S3U0U0_VIGRR; transcription factor MYB3R-1
STRINGXP_007137183.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein