PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g08680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 320aa    MW: 35737.5 Da    PI: 6.1786
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g08680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.7e-18205239135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Vradi05g08680.1 205 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 239
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-811294IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-17199249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.769199235IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-15200236IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.33E-15201263No hitNo description
CDDcd002021.02E-14204251No hitNo description
PROSITE patternPS003440205230IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15205239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEAQEFFQNT FYPQFPSDNI TPSNTNASTT DHFIVEDFFD FSNSDEAPLI DATFDSLPTD  60
HSSTLTNLDT TTNNSNFSAT DAHFSGDLSL PYDDLAELEW LSKFAEESFS SEDLQKLQLI  120
SGAGVQKDTT SETRDPNPAL FNPQVSVRGK ARSKRTRGPP CNWSSRLVVL SPNTMSSESS  180
HSDSGKKVAP RRRDVSEGSS EGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV  240
PEYRPAASPT FVLTKHSNSH RKVLELRRQK EMVRVQQQQL LHLQHQQNMM FDVPSNGEDY  300
LINQQWAPTS HTSSNLLLD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g08680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500589.10.0LOW QUALITY PROTEIN: GATA transcription factor 12
SwissprotP697819e-81GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1S3U3L70.0A0A1S3U3L7_VIGRR; GATA transcription factor
STRINGXP_007137230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-80GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]