PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g06870.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 504aa    MW: 55483.9 Da    PI: 6.0663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g06870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.31.4e-1031094951374
             GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsv.......selykalppsetsekn....sseela 79 
                      lv+lL+++Aea++   ++  la+ +L rl++l   s++g++m+Rlaayft AL+  l + +       ++ y ++ + + +  +    + ++la
  Vradi05g06870.1 109 LVHLLMAAAEALTGatKSRDLARVILVRLKDLvsHSSHGSNMERLAAYFTDALQGLLEGAGgahnnskHHYYITCGSHHPR--DdhhhQNDTLA 200
                      68**********87336666************7778999*****************9763211111103333333333333..23467999*** PP

             GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfA 169
                      a++l++++sP++kf+h+taNqaIleav++e+rvHi+D+di++G+QW++L+qaLas + gpp  +lRiT++++  +g  s  +++etg+rL+ fA
  Vradi05g06870.1 201 AFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPgpHLRITALSRTGTGrrSIASVQETGRRLTAFA 294
                      ******************************************************877665556*********888799999************* PP

             GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                      ++lg pf f+    +  e++++++L++ +gEal+ n++l+l +l  +    ++ + ++L+  k+l+P++v++ve+e+  + + F+ rf+++l++
  Vradi05g06870.1 295 ASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYR---APDSIASFLSGAKELKPRLVTLVEEEVGSSVGGFVGRFMDSLHH 385
                      ***********9999****************************9844...4444569************************************* PP

             GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sg 356
                      ysa+fdslea++p + ++r+ vEr +lg++iv  +a   +   e+ e+ ++W e+l++aGF+ vp+s  + +qaklll  ++ dgyrvee   +
  Vradi05g06870.1 386 YSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRT-GEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFN-DGYRVEELgTN 477
                      ***************************************99.899999**********************************.******98689 PP

             GRAS 357 slvlgWkdrpLvsvSaWr 374
                       lvl Wk+r+L+s+S W+
  Vradi05g06870.1 478 KLVLDWKSRRLLSASLWT 495
                      999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.72283475IPR005202Transcription factor GRAS
PfamPF035144.7E-101109495IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEIDTNTDID AIHNLHFSGY TTITDTNPSS DDDYGCNWNH WSPLVNWDAF TGSHDDFHHL  60
IDSIVSDPPT EYPSPEDHAA SNSPSASITE EDDAEEETAA ADDSKGLRLV HLLMAAAEAL  120
TGATKSRDLA RVILVRLKDL VSHSSHGSNM ERLAAYFTDA LQGLLEGAGG AHNNSKHHYY  180
ITCGSHHPRD DHHHQNDTLA AFQLLQDMSP YVKFGHFTAN QAILEAVAHE RRVHIVDYDI  240
MEGVQWASLM QALASDKTGP PGPHLRITAL SRTGTGRRSI ASVQETGRRL TAFAASLGQP  300
FTFHQCRLDP DETFKPSSLK LVRGEALVFN CMLNLPHLSY RAPDSIASFL SGAKELKPRL  360
VTLVEEEVGS SVGGFVGRFM DSLHHYSAVF DSLEAGFPMQ GRARALVERI FLGPRIVGSL  420
ARIYRTGEEL EERRSWGEWL GAAGFRGVPM SFANHCQAKL LLGLFNDGYR VEELGTNKLV  480
LDWKSRRLLS ASLWTSSSSS DSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-55954985382Protein SCARECROW
5b3h_A4e-55954984381Protein SCARECROW
5b3h_D4e-55954984381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g06870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500553.10.0scarecrow-like protein 26
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1S3U3F10.0A0A1S3U3F1_VIGRR; scarecrow-like protein 26
STRINGXP_007137382.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-148GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]