PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g04350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 279aa    MW: 31982.6 Da    PI: 6.7027
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g04350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092042372255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp+ +++  LA+++gL+++qV +WF N+R ++
  Vradi05g04350.1 204 WPYPTDADKVALAEWTGLEQKQVNNWFINQRKRH 237
                      69*****************************885 PP
2ELK25.53.1e-09157178122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK+ Ll  Ysgy+ +Lk+EFs
  Vradi05g04350.1 157 ELKDNLLSRYSGYITNLKHEFS 178
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.0E-101963IPR005540KNOX1
PfamPF037907.0E-122160IPR005540KNOX1
SMARTSM012561.3E-2067118IPR005541KNOX2
PfamPF037911.2E-2272117IPR005541KNOX2
PROSITE profilePS512139.865157177IPR005539ELK domain
SMARTSM011885.3E-6157178IPR005539ELK domain
PfamPF037891.9E-9157178IPR005539ELK domain
PROSITE profilePS5007112.276177240IPR001356Homeobox domain
SMARTSM003892.3E-11179244IPR001356Homeobox domain
SuperFamilySSF466891.33E-18179250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-25182241IPR009057Homeodomain-like
CDDcd000861.88E-12193239No hitNo description
PfamPF059202.3E-15197236IPR008422Homeobox KN domain
PROSITE patternPS000270215238IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAPLPPTKAV FGKEEDVSKA LRDKVASHPL FPYLLHACID CHKVGAPQDM ADLFEGIKEE  60
HSESKSYHSF LGADPELDDF MGTFCDLLVK YKSDLSRPFE EATMFLTHME TQLHSICNHL  120
SVSDNTLPQP PAGGSSGKDS MDGIKRIENK KTYEVEELKD NLLSRYSGYI TNLKHEFSRK  180
KKKEKLPKEA KKILLAWWNI HFKWPYPTDA DKVALAEWTG LEQKQVNNWF INQRKRHWKA  240
SEEMQVTILD GLYGPLHEKC FELYAHEPLL LYFALPTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RKKKKE
2178184RKKKKEK
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g04350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499200.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS68e-75KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1S3TZJ60.0A0A1S3TZJ6_VIGRR; homeobox protein knotted-1-like 6
STRINGGLYMA04G35850.21e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.19e-64KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]