PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g04180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 443aa    MW: 50726.4 Da    PI: 6.1045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g04180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-17166212148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Vradi05g04180.1 166 KGHWTIEEDGLLIQLVEQYGLRKWSHIAKLLP-GRIGKQCRERWHNHL 212
                      789*****************************.*************97 PP
2Myb_DNA-binding54.72.3e-17218260145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W  eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Vradi05g04180.1 218 KDTWNSEEDKILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 260
                      678*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.789161216IPR017930Myb domain
SuperFamilySSF466892.7E-31164259IPR009057Homeodomain-like
SMARTSM007174.7E-15165214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-27167219IPR009057Homeodomain-like
PfamPF139213.6E-18169227No hitNo description
CDDcd001671.02E-14169212No hitNo description
PROSITE profilePS5129421.273217267IPR017930Myb domain
SMARTSM007177.1E-17217265IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-22220265IPR009057Homeodomain-like
CDDcd001674.22E-13220263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDIETLLKET FLPQPLQESC MKDMIPLGNP SLQECLQDFH QIDQFHFNVP SSNNSIIQTP  60
TFDAFDNFTF TGSSPALDYE SKPFTDNFLY GNYNLILPQR NVELDMMVTD QSFLPFTPQE  120
IKPSNVVLPD QVSMNYYKTI GVNKNNKSYP TTPRTYKVRK KSNTVKGHWT IEEDGLLIQL  180
VEQYGLRKWS HIAKLLPGRI GKQCRERWHN HLRPDIKKDT WNSEEDKILI EAHAEVGNKW  240
AEIAKRLPGR TENSIKNHWN ATKRRQYSKR KCRSKYPRGT LLQEYIKSLN LDKNPPIDYR  300
RKSAVNNAIK TSTSKSTAPA LPQTASQFSA IESMAPGSDF NVVPDFLFGD NLFQEDCSIH  360
SLLDAVPCVP FRDNNEGKFQ CDPMMEGMQH CEYGGIECFA AVNGDENHAE TDMQPEMLEV  420
EVKKELDLVE MISQINSETF HV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-451652663104C-Myb DNA-Binding Domain
1msf_C4e-451652663104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g04180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635910.10.0transcription factor MYB98-like
SwissprotQ9S7L23e-85MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A3Q0EVY00.0A0A3Q0EVY0_VIGRR; transcription factor MYB98-like
STRINGXP_007138059.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-87myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]