PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g04030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 193aa    MW: 22117.8 Da    PI: 9.8618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g04030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.1e-101969654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54
                     + +Er+RR +++s  ++L +l+P++ k+p+ K  l   + L +A +YIk++
  Vradi05g04030.1 19 KTIERNRRIHMKSLCHQLASLIPPNLKPPKSKlmLGQQDQLDLAARYIKHM 69
                     689*********************6678888867888899**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.33E-51174No hitNo description
PROSITE profilePS508889.9471369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-91787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-91791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-71969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00281975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKKRLAASTI DDSTKLDRKT IERNRRIHMK SLCHQLASLI PPNLKPPKSK LMLGQQDQLD  60
LAARYIKHMR ERIEKLKRQK EQAMLNQSSE RKMFDKNDET KLPILELRDL GSGIEVMLVS  120
GLNKTFMLYE VISVLEEEGA EVVTASFSTV GDKLFYVVHA QVKISRVGVE TTRVKDRLQE  180
FIAPLEIWPE DV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g04030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-148AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500627.11e-140transcription factor bHLH168
TrEMBLA0A1S3U3M71e-138A0A1S3U3M7_VIGRR; transcription factor bHLH168
STRINGXP_007138091.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-26bHLH family protein