 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi05g03520.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 383aa MW: 43746.8 Da PI: 6.3549 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi05g03520.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 26.5 | 8.3e-09 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
k+i n + r + kR++ +lK +E + C++++++i++ +g
Vradi05g03520.1 9 KPITNGRDRDLALMKRKKALLKTISEFCSVCGVKACLIMYDGKG 52
6899***********************************97665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MGRPKLILKP ITNGRDRDLA LMKRKKALLK TISEFCSVCG VKACLIMYDG KGDSPPLTWP 60
QDPIEMHSII QRYERMVFEK IPKNFDLNNF FEMRKNMVDS EIARVQKEIL ETKYPTWHPC 120
FNNLGAEELK NFIARLDCKL EACNQRTVMF KCKKQDEAQF NFKQCLIQPE CVAPNPNQLV 180
FMKDIFQNQL LFAPMNPLNG NLAPSFQHNS EKGSSSQSQK LNFDPNLMQV KAENTGVVDT 240
SNACQTDVLK NPSNKFDVPC DFLDESFNLF DQLGEIQSLN QHWGNNQQDA LVVGGSITTI 300
NGGVTNDTNF HGNQYNIETS LCNYNGVMQS YNYDASWQDI GFQQQNLQNM VTLPSFQPSE 360
DKFRQITTTD TLKICYPNIY FK*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
