PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g03240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 346aa    MW: 38908.5 Da    PI: 5.8236
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g03240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-072833152254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +yp++e++++L +++gL+ +q+ +WF N+R +
  Vradi05g03240.1 283 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315
                      59*****************************87 PP
2ELK29.22.1e-10236257122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Vradi05g03240.1 236 ELKHELKQGYKEKIVDIREEIL 257
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1884128IPR005540KNOX1
PfamPF037902.2E-1786127IPR005540KNOX1
SMARTSM012561.5E-13124179IPR005541KNOX2
PfamPF037912.6E-10140178IPR005541KNOX2
SMARTSM011886.1E-4236257IPR005539ELK domain
PfamPF037897.7E-7236257IPR005539ELK domain
PROSITE profilePS512139.969236256IPR005539ELK domain
PROSITE profilePS5007111.612256319IPR001356Homeobox domain
SuperFamilySSF466895.13E-16258322IPR009057Homeodomain-like
SMARTSM003891.2E-10258323IPR001356Homeobox domain
CDDcd000865.34E-11259320No hitNo description
Gene3DG3DSA:1.10.10.605.6E-25263320IPR009057Homeodomain-like
PfamPF059209.0E-18276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAHEITFQPF TEEQQMGQGR DMQRLLPLSA GAPTWLNGSN AATLRQQNFL HLQPESATAQ  60
PNDDVRGGID RNRTESNSEP DDLAEYKADI LGHPLYDQLL SAHVSCLRIA TPVDQLPRID  120
AQLQQSQRVV DKLLFSVPTH YVILLCAFKE QLQQHVRVHA MEAVMACWEL EQSLQTLTGV  180
SPGEGTGATM SDDEEDQAES NANLYEGSMD GADSLSFGPL VPTETERSLM ERVRQELKHE  240
LKQGYKEKIV DIREEILRKR RAGKLPGDTT SLLKAWWQSH SKWPYPTEED KARLVQETGL  300
QLKQINNWFI NQRKRNWHTN PSSSSGSKSK RKSSGAGETS NQSFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g03240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500905.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480011e-153KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A1S3U4G10.0A0A1S3U4G1_VIGRR; homeobox protein knotted-1-like LET12 isoform X1
STRINGXP_007138444.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-148KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]