PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g03010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 299aa    MW: 33360.1 Da    PI: 4.8269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g03010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82.1e-11101149455
              AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +GV+ ++   rW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Vradi05g03010.1 101 RGVSKYRGVARWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 149
                      78877666678999998856...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.90999157IPR001471AP2/ERF domain
PfamPF008471.3E-7101149IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-15101159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-14101158IPR001471AP2/ERF domain
CDDcd000184.78E-21104159No hitNo description
SMARTSM003802.3E-18105163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQPLTTTTLT PQTLSPTRSN EQEEVSPEIP LLNAAQYTEE SPGTDGQADM KLICGTRIAG  60
MSHRTRKDDK VKLFLVCFKI NYCRKQNFTF KICRKSSGFS RGVSKYRGVA RWEARIGRVF  120
GNKYLYLGTY ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPNNN DNTANSNVLD  180
ANPNSETNFT PNSNQEQGFN FFQSQESTVT QPRSSGATSA LGLLLQSSKF KEMMEMTSAA  240
DLSTAASGSE LVPCTFPDDI QTYFECEDSN RYGEGDDNMF GELNGFVPHM FHCDDFES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g03010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636198.11e-139AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q0EWT41e-138A0A3Q0EWT4_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_007138410.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.25e-36ARIA-interacting double AP2 domain protein