PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g02480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 313aa    MW: 34781.6 Da    PI: 10.1023
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g02480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.4e-18178211134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+ C+ttkTplWR gp g+k+LCnaCG+++rk +
  Vradi05g02480.1 178 CADCHTTKTPLWRTGPTGPKSLCNACGIRQRKAR 211
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.033172208IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-18172223IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12175213No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.11E-11177207No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003202.7E-16178211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHEPMIPTYR YSVVSSPMSI DLNEDHTHTL FSTIHQVSSS SSSLSTSILF NPDQAQGGFC  60
YCESKHLQEA QKIVCFGGSC DHQAEKIEKR SDLELRLWEK EECDNLQGED SSTNWMPPKM  120
RMVRKIMVSD QTGSHKADIS NSKQMKAKEK NPTLSQLVTD DSNYNSSSNN NSVTARVCAD  180
CHTTKTPLWR TGPTGPKSLC NACGIRQRKA RRAIAAAATT AKGTNRLEAK KSEVKKGKKL  240
HSKGKKPKTG SAPVLVKKKR KPAKHRKKFS AFEDLSVRFQ QVFPQDEKEA AILLMALSHG  300
LLHGFPSDRY IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244260KKPKTGSAPVLVKKKRK
2256261KKKRKP
3256267KKKRKPAKHRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g02480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499949.10.0GATA transcription factor 21
TrEMBLA0A1S3U1T20.0A0A1S3U1T2_VIGRR; GATA transcription factor 21
STRINGXP_007138732.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-17GATA family protein