PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 209aa MW: 23144.6 Da PI: 4.5238

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g01810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.7	1.4e-18	18	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g++v+eIr p++ rkr++lg++++ae+Aa+a +aa+ +l+g Vradi05g01810.1 18 SYRGVRKRK-WGKYVSEIRLPNS---RKRIWLGSYDSAEKAARAFDAAMFCLRG 67 6***999.******933...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.2E-32	18	81	IPR001471	AP2/ERF domain
Pfam	PF00847	2.2E-11	18	67	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.232	18	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-20	18	76	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.6E-29	18	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-9	19	30	IPR001471	AP2/ERF domain
CDD	cd00018	2.72E-29	19	77	No hit	No description
PRINTS	PR00367	1.8E-9	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MVKPGGVEKT TEERTNTSYR GVRKRKWGKY VSEIRLPNSR KRIWLGSYDS AEKAARAFDA 60 AMFCLRGSGA KFNFPNDPPN IAGGRTMTPP QIQIAAARFA NSEPQRECSG QQHVESLASD 120 EEMASFRLES SSPPLSDVSV QNDPIFQNGS FPDPFSDLGS GSFAPEFSDF PCFDDFSRDF 180 FLPGLPSFDD GEENVDGMIV QDPFLWNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	16	77	12	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00151	DAP	Transfer from AT1G19210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g01810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014500406.1	1e-152	ethylene-responsive transcription factor ERF017
Swissprot	Q84QC2	4e-49	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	A0A1S3U321	1e-151	A0A1S3U321_VIGRR; ethylene-responsive transcription factor ERF017
STRING	XP_007138631.1	1e-132	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1479	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	2e-51	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]