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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vradi05g00270.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
B3 |
Protein Properties |
Length: 300aa MW: 33035.8 Da PI: 7.5006 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi05g00270.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 96.5 | 1.8e-30 | 38 | 138 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
B3 5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92
tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l
Vradi05g00270.1 38 VTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDmYRHRL 131
689***********************66677899*************************************************76688889999 PP
EEEEE-S CS
B3 93 vvkvfrk 99
++ ++r+
Vradi05g00270.1 132 YIDWRRR 138
9999987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MDLIQQVKGT YSDSREEEEE EEVTEIIGIT REAESSMVTP SDVGKLNRLV IPKQHAEKYF 60 PLDSSSNEKG LLLNFEDRNG KVWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ 120 RGLGDMYRHR LYIDWRRRTD HGHPPSDPSA SPLFLPSIRW SSMPMGGGAD QNLAGRGNSI 180 VPMIIDSVPV NVGHHNHRHG HGGMSSGGGS STTSSGKRLR LFGVNMECAS SGEDSKGLSL 240 GSAAHVTVGN SLPSSSSLQQ RLRMPHEDPI SSSARFGDHK GGTGTSLLFD LDPSLQYHQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 7e-58 | 37 | 142 | 11 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-58 | 37 | 142 | 11 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |