PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g10090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 327aa    MW: 35996 Da    PI: 4.992
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g10090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.57.5e-2839131186
         trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rWt+qe+l+Li+++++ e+r+r g+       l +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + ++l+
  Vradi04g10090.1  39 RWTRQEILVLIQGKSDAENRFRPGRgsgsafgLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLR 131
                      8*********************8755677788*********************************************9999999998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.79532103IPR017877Myb-like domain
CDDcd122038.63E-1538110No hitNo description
PfamPF138373.0E-1339126No hitNo description
Gene3DG3DSA:1.10.10.603.1E-539102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALDQPSNPN AVDGAGNGAA PCSAADGGDD GRPPARLPRW TRQEILVLIQ GKSDAENRFR  60
PGRGSGSAFG LSEPKWALVS AYCKKHGVNR EPVQCRKRWS NLAGDYKKIK EWESQVRDET  120
ESFWLMRNDL RRERKLPGYF DREVYNILDS PSTAAAATVE TPTAAVEAAV DEEVHLYDSN  180
RRVGSDDGLF SDCEKEEVLL SAPSKDVPAP VPISEKQFQP LLQLCEGEGN AEGTTNEKRA  240
TPNPEMGSTS QGGRKRKRFS TDAEEESLQS QLIDVLEKNG KMLRDHLEAQ NTNFQLDRQQ  300
QKDTATNIVA VLDKLADALG RIADKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g10090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496636.10.0trihelix transcription factor ASR3
SwissprotQ8VZ203e-99ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1S3TS700.0A0A1S3TS70_VIGRR; trihelix transcription factor ASR3
STRINGXP_007139321.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-97Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]