PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27675.5 Da    PI: 8.4388
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Vradi04g09520.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                     79***********************************************96 PP
2K-box769.8e-2610216636100
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      R+llGedL++L+ keL+qLe+qL++slk++Rs+K++++l+q+ +lq+ke++l e+n++L++klee
  Vradi04g09520.1 102 RNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEE 166
                      9*************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.375161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-33277IPR002100Transcription factor, MADS-box
CDDcd002656.98E-46276No hitNo description
PRINTSPR004048.5E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.63180170IPR002487Transcription factor, K-box
PfamPF014864.8E-21102164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
TSMLKTLERY QKCSYGAVEV SKPAKELEFV YPMTRVNYFD CRNLLGEDLG PLNTKELEQL  120
ERQLDSSLKQ VRSTKTQFML DQLADLQNKE QMLVEANRSL TMKLEEINSR NHYRQSWEAG  180
DQSMQYGGPQ NSQSQGFFQP LECNPTLQIG PDYRYNVVAS DQITATTPAQ QVSGFIPGWM  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-26751641101Developmental protein SEPALLATA 3
4ox0_B3e-26751641101Developmental protein SEPALLATA 3
4ox0_C3e-26751641101Developmental protein SEPALLATA 3
4ox0_D3e-26751641101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367661e-138BT136766.1 Lotus japonicus clone JCVI-FLLj-12N1 unknown mRNA.
GenBankBT1486151e-138BT148615.1 Lotus japonicus clone JCVI-FLLj-4J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497371.11e-165developmental protein SEPALLATA 1 isoform X2
RefseqXP_017419455.11e-165PREDICTED: developmental protein SEPALLATA 1 isoform X2
RefseqXP_027926535.11e-165developmental protein SEPALLATA 1-like isoform X2
SwissprotQ8LLR21e-130MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3TUA21e-164A0A1S3TUA2_VIGRR; developmental protein SEPALLATA 1 isoform X2
STRINGXP_007139420.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-112MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]