PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g09510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28440.3 Da PI: 8.3558 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++v ++G g+W+++a+ g++R++k+c++rw +yl Vradi04g09510.1 16 KGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 70 | 113 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T+ E+ + ++++ lG++ W+tIa++++ gRt++++k++w+++ Vradi04g09510.1 70 GQLTPLEEGTIMELHAILGNK-WSTIAKYLP-GRTDNEIKNYWRTH 113 667999999************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.563 | 11 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 12 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-12 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 67 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-10 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.426 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.4E-13 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-8 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVAMMGCLAT EKGWKKGPWT GEEDKLLSEY VSLYGEGRWS SVAKFTGLNR SGKSCRLRWV 60 NYLKPGLKKG QLTPLEEGTI MELHAILGNK WSTIAKYLPG RTDNEIKNYW RTHFGKREKS 120 KHKKLQRRQK EQQQQPEKCD LKSIMCHKDT MNGTKSFETQ NSKLQEIGLM NPTIDDQYNN 180 TVPSMHEGFS STWPDTLVDD GLWFGLWDFD EPLMSFADYV NQFSKCVMPN EGTQSHVKTS 240 CFDDIFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 16 | 110 | 27 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g09510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496890.2 | 0.0 | myb-related protein 340 | ||||
TrEMBL | A0A1S3TT17 | 0.0 | A0A1S3TT17_VIGRR; myb-related protein 340 | ||||
STRING | XP_007139421.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 2e-60 | myb domain protein 121 |